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书名: Learning Spark

作者: Holden Karau, Andy Konwinski, Patrick Wendell, Matei Zaharia

副书名: Lightning-Fast Big Data Analytics

出版日期: February 2015 (est.)

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PROGRAMMING LANGUAGESSPARK
Learning Spark
ISBN: 978-1-449-35862-4
US $39.99 CAN $ 45.99
Learning Spark is at the
top of my list for anyone
needing a gentle guide
to the most popular
framework for building
big data applications.
Ben Lorica
Chief Data Scientist, O’Reilly Media
Twitter: @oreillymedia
facebook.com/oreilly
Data in all domains is getting bigger. How can you work with it efficiently?
This book introduces Apache Spark, the open source cluster computing
system that makes data analytics fast to write and fast to run. With Spark,
you can tackle big datasets quickly through simple APIs in Python, Java,
and Scala.
Written by the developers of Spark, this book will have data scientists and
engineers up and running in no time. You’ll learn how to express parallel
jobs with just a few lines of code, and cover applications from simple batch
jobs to stream processing and machine learning.
Quickly dive into Spark capabilities such as distributed
datasets, in-memory caching, and the interactive shell
Leverage Spark’s powerful built-in libraries, including Spark
SQL, Spark Streaming, and MLlib
Use one programming paradigm instead of mixing and
matching tools like Hive, Hadoop, Mahout, and Storm
Learn how to deploy interactive, batch, and streaming
applications
Connect to data sources including HDFS, Hive, JSON, and S3
Master advanced topics like data partitioning and shared
variables
Holden Karau, a software development engineer at Databricks, is active in open
source and the author of Fast Data Processing with Spark (Packt Publishing).
Andy Konwinski, co-founder of Databricks, is a committer on Apache Spark and
co-creator of the Apache Mesos project.
Patrick Wendell is a co-founder of Databricks and a committer on Apache Spark.
He also maintains several subsystems of Spark’s core engine.
Matei Zaharia, CTO at Databricks, is the creator of Apache Spark and serves as
its Vice President at Apache.
Learning Spark
Karau, Konwinski,
Wendell & Zaharia
Holden Karau, Andy Konwinski,
Patrick Wendell & Matei Zaharia
Learning
Spark
LIGHTNING-FAST DATA ANALYSIS
PROGRAMMING LANGUAGESSPARK
Learning Spark
ISBN: 978-1-449-35862-4
US $39.99 CAN $45.99
Learning Spark is at the
top of my list for anyone
needing a gentle guide
to the most popular
framework for building
big data applications.
Ben Lorica
Chief Data Scientist, O’Reilly Media
Twitter: @oreillymedia
facebook.com/oreilly
Data in all domains is getting bigger. How can you work with it efficiently?
This book introduces Apache Spark, the open source cluster computing
system that makes data analytics fast to write and fast to run. With Spark,
you can tackle big datasets quickly through simple APIs in Python, Java,
and Scala.
Written by the developers of Spark, this book will have data scientists and
engineers up and running in no time. You’ll learn how to express parallel
jobs with just a few lines of code, and cover applications from simple batch
jobs to stream processing and machine learning.
Quickly dive into Spark capabilities such as distributed
datasets, in-memory caching, and the interactive shell
Leverage Spark’s powerful built-in libraries, including Spark
SQL, Spark Streaming, and MLlib
Use one programming paradigm instead of mixing and
matching tools like Hive, Hadoop, Mahout, and Storm
Learn how to deploy interactive, batch, and streaming
applications
Connect to data sources including HDFS, Hive, JSON, and S3
Master advanced topics like data partitioning and shared
variables
Holden Karau, a software development engineer at Databricks, is active in open
source and the author of Fast Data Processing with Spark (Packt Publishing).
Andy Konwinski, co-founder of Databricks, is a committer on Apache Spark and
co-creator of the Apache Mesos project.
Patrick Wendell is a co-founder of Databricks and a committer on Apache Spark.
He also maintains several subsystems of Spark’s core engine.
Matei Zaharia, CTO at Databricks, is the creator of Apache Spark and serves as
its Vice President at Apache.
Learning Spark
Karau, Konwinski,
Wendell & Zaharia
Holden Karau, Andy Konwinski,
Patrick Wendell & Matei Zaharia
Learning
Spark
LIGHTNING-FAST DATA ANALYSIS
Holden Karau, Andy Konwinski, Patrick Wendell, and
Matei Zaharia
Learning Spark
978-1-449-35862-4
[LSI]
Learning Spark
by Holden Karau, Andy Konwinski, Patrick Wendell, and Matei Zaharia
Copyright © 2015 Databricks. All rights reserved.
Printed in the United States of America.
Published by O’Reilly Media, Inc., 1005 Gravenstein Highway North, Sebastopol, CA 95472.
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2015-01-26: First Release
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The O’Reilly logo is a registered trademark of O’Reilly Media, Inc. Learning Spark, the cover image of a
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thereof complies with such licenses and/or rights.
Table of Contents
Foreword. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix
Preface. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xi
1.
Introduction to Data Analysis with Spark. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
What Is Apache Spark? 1
A Unified Stack 2
Spark Core 3
Spark SQL 3
Spark Streaming 3
MLlib 4
GraphX 4
Cluster Managers 4
Who Uses Spark, and for What? 4
Data Science Tasks 5
Data Processing Applications 6
A Brief History of Spark 6
Spark Versions and Releases 7
Storage Layers for Spark 7
2.
Downloading Spark and Getting Started. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Downloading Spark 9
Introduction to Spark’s Python and Scala Shells 11
Introduction to Core Spark Concepts 14
Standalone Applications 17
Initializing a SparkContext 17
Building Standalone Applications 18
Conclusion 21
iii
3. Programming with RDDs. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23
RDD Basics 23
Creating RDDs 25
RDD Operations 26
Transformations 27
Actions 28
Lazy Evaluation 29
Passing Functions to Spark 30
Python 30
Scala 31
Java 32
Common Transformations and Actions 34
Basic RDDs 34
Converting Between RDD Types 42
Persistence (Caching) 44
Conclusion 46
4.
Working with Key/Value Pairs. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
Motivation 47
Creating Pair RDDs 48
Transformations on Pair RDDs 49
Aggregations 51
Grouping Data 57
Joins 58
Sorting Data 59
Actions Available on Pair RDDs 60
Data Partitioning (Advanced) 61
Determining an RDD’s Partitioner 64
Operations That Benefit from Partitioning 65
Operations That Affect Partitioning 65
Example: PageRank 66
Custom Partitioners 68
Conclusion 70
5.
Loading and Saving Your Data. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 71
Motivation 71
File Formats 72
Text Files 73
JSON 74
Comma-Separated Values and Tab-Separated Values 77
SequenceFiles 80
Object Files 83
iv | Table of Contents
Hadoop Input and Output Formats 84
File Compression 87
Filesystems 89
Local/“Regular” FS 89
Amazon S3 90
HDFS 90
Structured Data with Spark SQL 91
Apache Hive 91
JSON 92
Databases 93
Java Database Connectivity 93
Cassandra 94
HBase 96
Elasticsearch 97
Conclusion 98
6. Advanced Spark Programming. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 99
Introduction 99
Accumulators 100
Accumulators and Fault Tolerance 103
Custom Accumulators 103
Broadcast Variables 104
Optimizing Broadcasts 106
Working on a Per-Partition Basis 107
Piping to External Programs 109
Numeric RDD Operations 113
Conclusion 115
7.
Running on a Cluster. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 117
Introduction 117
Spark Runtime Architecture 117
The Driver 118
Executors 119
Cluster Manager 119
Launching a Program 120
Summary 120
Deploying Applications with spark-submit 121
Packaging Your Code and Dependencies 123
A Java Spark Application Built with Maven 124
A Scala Spark Application Built with sbt 126
Dependency Conflicts 128
Scheduling Within and Between Spark Applications 128
Table of Contents | v
Cluster Managers 129
Standalone Cluster Manager 129
Hadoop YARN 133
Apache Mesos 134
Amazon EC2 135
Which Cluster Manager to Use? 138
Conclusion 139
8.
Tuning and Debugging Spark. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 141
Configuring Spark with SparkConf 141
Components of Execution: Jobs, Tasks, and Stages 145
Finding Information 150
Spark Web UI 150
Driver and Executor Logs 154
Key Performance Considerations 155
Level of Parallelism 155
Serialization Format 156
Memory Management 157
Hardware Provisioning 158
Conclusion 160
9.
Spark SQL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 161
Linking with Spark SQL 162
Using Spark SQL in Applications 164
Initializing Spark SQL 164
Basic Query Example 165
SchemaRDDs 166
Caching 169
Loading and Saving Data 170
Apache Hive 170
Parquet 171
JSON 172
From RDDs 174
JDBC/ODBC Server 175
Working with Beeline 177
Long-Lived Tables and Queries 178
User-Defined Functions 178
Spark SQL UDFs 178
Hive UDFs 179
Spark SQL Performance 180
Performance Tuning Options 180
Conclusion 182
vi | Table of Contents
10. Spark Streaming. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 183
A Simple Example 184
Architecture and Abstraction 186
Transformations 189
Stateless Transformations 190
Stateful Transformations 192
Output Operations 197
Input Sources 199
Core Sources 199
Additional Sources 200
Multiple Sources and Cluster Sizing 204
24/7 Operation 205
Checkpointing 205
Driver Fault Tolerance 206
Worker Fault Tolerance 207
Receiver Fault Tolerance 207
Processing Guarantees 208
Streaming UI 208
Performance Considerations 209
Batch and Window Sizes 209
Level of Parallelism 210
Garbage Collection and Memory Usage 210
Conclusion 211
11.
Machine Learning with MLlib. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 213
Overview 213
System Requirements 214
Machine Learning Basics 215
Example: Spam Classification 216
Data Types 218
Working with Vectors 219
Algorithms 220
Feature Extraction 221
Statistics 223
Classification and Regression 224
Clustering 229
Collaborative Filtering and Recommendation 230
Dimensionality Reduction 232
Model Evaluation 234
Tips and Performance Considerations 234
Preparing Features 234
Configuring Algorithms 235
Table of Contents | vii
Caching RDDs to Reuse 235
Recognizing Sparsity 235
Level of Parallelism 236
Pipeline API 236
Conclusion 237
Index. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 239
viii | Table of Contents
Foreword
In a very short time, Apache Spark has emerged as the next generation big data pro‐
cessing engine, and is being applied throughout the industry faster than ever. Spark
improves over Hadoop MapReduce, which helped ignite the big data revolution, in
several key dimensions: it is much faster, much easier to use due to its rich APIs, and
it goes far beyond batch applications to support a variety of workloads, including
interactive queries, streaming, machine learning, and graph processing.
I have been privileged to be closely involved with the development of Spark all the
way from the drawing board to what has become the most active big data open
source project today, and one of the most active Apache projects! As such, I’m partic‐
ularly delighted to see Matei Zaharia, the creator of Spark, teaming up with other
longtime Spark developers Patrick Wendell, Andy Konwinski, and Holden Karau to
write this book.
With Spark’s rapid rise in popularity, a major concern has been lack of good refer‐
ence material. This book goes a long way to address this concern, with 11 chapters
and dozens of detailed examples designed for data scientists, students, and developers
looking to learn Spark. It is written to be approachable by readers with no back‐
ground in big data, making it a great place to start learning about the field in general.
I hope that many years from now, you and other readers will fondly remember this as
the book that introduced you to this exciting new field.
—Ion Stoica, CEO of Databricks and Co-director, AMPlab, UC Berkeley
ix
Preface
As parallel data analysis has grown common, practitioners in many fields have sought
easier tools for this task. Apache Spark has quickly emerged as one of the most popu‐
lar, extending and generalizing MapReduce. Spark offers three main benefits. First, it
is easy to use—you can develop applications on your laptop, using a high-level API
that lets you focus on the content of your computation. Second, Spark is fast, ena‐
bling interactive use and complex algorithms. And third, Spark is a general engine,
letting you combine multiple types of computations (e.g., SQL queries, text process‐
ing, and machine learning) that might previously have required different engines.
These features make Spark an excellent starting point to learn about Big Data in
general.
This introductory book is meant to get you up and running with Spark quickly.
You’ll learn how to download and run Spark on your laptop and use it interactively
to learn the API. Once there, we’ll cover the details of available operations and dis‐
tributed execution. Finally, you’ll get a tour of the higher-level libraries built into
Spark, including libraries for machine learning, stream processing, and SQL. We
hope that this book gives you the tools to quickly tackle data analysis problems,
whether you do so on one machine or hundreds.
Audience
This book targets data scientists and engineers. We chose these two groups because
they have the most to gain from using Spark to expand the scope of problems they
can solve. Spark’s rich collection of data-focused libraries (like MLlib) makes it easy
for data scientists to go beyond problems that fit on a single machine while using
their statistical background. Engineers, meanwhile, will learn how to write general-
purpose distributed programs in Spark and operate production applications. Engi‐
neers and data scientists will both learn different details from this book, but will both
be able to apply Spark to solve large distributed problems in their respective fields.
xi
Data scientists focus on answering questions or building models from data. They
often have a statistical or math background and some familiarity with tools like
Python, R, and SQL. We have made sure to include Python and, where relevant, SQL
examples for all our material, as well as an overview of the machine learning and
library in Spark. If you are a data scientist, we hope that after reading this book you
will be able to use the same mathematical approaches to solve problems, except much
faster and on a much larger scale.
The second group this book targets is software engineers who have some experience
with Java, Python, or another programming language. If you are an engineer, we
hope that this book will show you how to set up a Spark cluster, use the Spark shell,
and write Spark applications to solve parallel processing problems. If you are familiar
with Hadoop, you have a bit of a head start on figuring out how to interact with
HDFS and how to manage a cluster, but either way, we will cover basic distributed
execution concepts.
Regardless of whether you are a data scientist or engineer, to get the most out of this
book you should have some familiarity with one of Python, Java, Scala, or a similar
language. We assume that you already have a storage solution for your data and we
cover how to load and save data from many common ones, but not how to set them
up. If you don’t have experience with one of those languages, don’t worry: there are
excellent resources available to learn these. We call out some of the books available in
“Supporting Books” on page xii.
How This Book Is Organized
The chapters of this book are laid out in such a way that you should be able to go
through the material front to back. At the start of each chapter, we will mention
which sections we think are most relevant to data scientists and which sections we
think are most relevant for engineers. That said, we hope that all the material is acces‐
sible to readers of either background.
The first two chapters will get you started with getting a basic Spark installation on
your laptop and give you an idea of what you can accomplish with Spark. Once we’ve
got the motivation and setup out of the way, we will dive into the Spark shell, a very
useful tool for development and prototyping. Subsequent chapters then cover the
Spark programming interface in detail, how applications execute on a cluster, and
higher-level libraries available on Spark (such as Spark SQL and MLlib).
Supporting Books
If you are a data scientist and don’t have much experience with Python, the books
Learning Python and Head First Python (both O’Reilly) are excellent introductions. If
xii | Preface
you have some Python experience and want more, Dive into Python (Apress) is a
great book to help you get a deeper understanding of Python.
If you are an engineer and after reading this book you would like to expand your data
analysis skills, Machine Learning for Hackers and Doing Data Science are excellent
books (both O’Reilly).
This book is intended to be accessible to beginners. We do intend to release a deep-
dive follow-up for those looking to gain a more thorough understanding of Spark’s
internals.
Conventions Used in This Book
The following typographical conventions are used in this book:
Italic
Indicates new terms, URLs, email addresses, filenames, and file extensions.
Constant width
Used for program listings, as well as within paragraphs to refer to program ele‐
ments such as variable or function names, databases, data types, environment
variables, statements, and keywords.
Constant width bold
Shows commands or other text that should be typed literally by the user.
Constant width italic
Shows text that should be replaced with user-supplied values or by values deter‐
mined by context.
This element signifies a tip or suggestion.
This element indicates a warning or caution.
Code Examples
All of the code examples found in this book are on GitHub. You can examine them
and check them out from https://github.com/databricks/learning-spark. Code exam‐
ples are provided in Java, Scala, and Python.
Preface | xiii
Our Java examples are written to work with Java version 6 and
higher. Java 8 introduces a new syntax called lambdas that makes
writing inline functions much easier, which can simplify Spark
code. We have chosen not to take advantage of this syntax in most
of our examples, as most organizations are not yet using Java 8. If
you would like to try Java 8 syntax, you can see the Databricks blog
post on this topic. Some of the examples will also be ported to Java
8 and posted to the book’s GitHub site.
This book is here to help you get your job done. In general, if example code is offered
with this book, you may use it in your programs and documentation. You do not
need to contact us for permission unless you’re reproducing a significant portion of
the code. For example, writing a program that uses several chunks of code from this
book does not require permission. Selling or distributing a CD-ROM of examples
from O’Reilly books does require permission. Answering a question by citing this
book and quoting example code does not require permission. Incorporating a signifi‐
cant amount of example code from this book into your product’s documentation
does require permission.
We appreciate, but do not require, attribution. An attribution usually includes the
title, author, publisher, and ISBN. For example: “Learning Spark by Holden Karau,
Andy Konwinski, Patrick Wendell, and Matei Zaharia (O’Reilly). Copyright 2015
Databricks, 978-1-449-35862-4.”
If you feel your use of code examples falls outside fair use or the permission given
above, feel free to contact us at permissions@oreilly.com.
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xiv | Preface
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Acknowledgments
The authors would like to thank the reviewers who offered feedback on this book:
Joseph Bradley, Dave Bridgeland, Chaz Chandler, Mick Davies, Sam DeHority, Vida
Ha, Andrew Gal, Michael Gregson, Jan Joeppen, Stephan Jou, Jeff Martinez, Josh
Mahonin, Andrew Or, Mike Patterson, Josh Rosen, Bruce Szalwinski, Xiangrui
Meng, and Reza Zadeh.
The authors would like to extend a special thanks to David Andrzejewski, David But‐
tler, Juliet Hougland, Marek Kolodziej, Taka Shinagawa, Deborah Siegel, Dr. Normen
Müller, Ali Ghodsi, and Sameer Farooqui. They provided detailed feedback on the
majority of the chapters and helped point out many significant improvements.
We would also like to thank the subject matter experts who took time to edit and
write parts of their own chapters. Tathagata Das worked with us on a very tight
schedule to finish Chapter 10. Tathagata went above and beyond with clarifying
Preface | xv
examples, answering many questions, and improving the flow of the text in addition
to his technical contributions. Michael Armbrust helped us check the Spark SQL
chapter for correctness. Joseph Bradley provided the introductory example for MLlib
in Chapter 11. Reza Zadeh provided text and code examples for dimensionality
reduction. Xiangrui Meng, Joseph Bradley, and Reza Zadeh also provided editing and
technical feedback for the MLlib chapter.
xvi | Preface
CHAPTER 1
Introduction to Data Analysis with Spark
This chapter provides a high-level overview of what Apache Spark is. If you are
already familiar with Apache Spark and its components, feel free to jump ahead to
Chapter 2.
What Is Apache Spark?
Apache Spark is a cluster computing platform designed to be fast and general-
purpose.
On the speed side, Spark extends the popular MapReduce model to efficiently sup‐
port more types of computations, including interactive queries and stream process‐
ing. Speed is important in processing large datasets, as it means the difference
between exploring data interactively and waiting minutes or hours. One of the main
features Spark offers for speed is the ability to run computations in memory, but the
system is also more efficient than MapReduce for complex applications running on
disk.
On the generality side, Spark is designed to cover a wide range of workloads that pre‐
viously required separate distributed systems, including batch applications, iterative
algorithms, interactive queries, and streaming. By supporting these workloads in the
same engine, Spark makes it easy and inexpensive to combine different processing
types, which is often necessary in production data analysis pipelines. In addition, it
reduces the management burden of maintaining separate tools.
Spark is designed to be highly accessible, offering simple APIs in Python, Java, Scala,
and SQL, and rich built-in libraries. It also integrates closely with other Big Data
tools. In particular, Spark can run in Hadoop clusters and access any Hadoop data
source, including Cassandra.
1
A Unified Stack
The Spark project contains multiple closely integrated components. At its core, Spark
is a “computational engine” that is responsible for scheduling, distributing, and mon‐
itoring applications consisting of many computational tasks across many worker
machines, or a computing cluster. Because the core engine of Spark is both fast and
general-purpose, it powers multiple higher-level components specialized for various
workloads, such as SQL or machine learning. These components are designed to
interoperate closely, letting you combine them like libraries in a software project.
A philosophy of tight integration has several benefits. First, all libraries and higher-
level components in the stack benefit from improvements at the lower layers. For
example, when Spark’s core engine adds an optimization, SQL and machine learning
libraries automatically speed up as well. Second, the costs associated with running the
stack are minimized, because instead of running 5–10 independent software systems,
an organization needs to run only one. These costs include deployment, mainte‐
nance, testing, support, and others. This also means that each time a new component
is added to the Spark stack, every organization that uses Spark will immediately be
able to try this new component. This changes the cost of trying out a new type of data
analysis from downloading, deploying, and learning a new software project to
upgrading Spark.
Finally, one of the largest advantages of tight integration is the ability to build appli‐
cations that seamlessly combine different processing models. For example, in Spark
you can write one application that uses machine learning to classify data in real time
as it is ingested from streaming sources. Simultaneously, analysts can query the
resulting data, also in real time, via SQL (e.g., to join the data with unstructured log‐
files). In addition, more sophisticated data engineers and data scientists can access
the same data via the Python shell for ad hoc analysis. Others might access the data in
standalone batch applications. All the while, the IT team has to maintain only one
system.
Here we will briefly introduce each of Spark’s components, shown in Figure 1-1.
2 | Chapter 1: Introduction to Data Analysis with Spark
Figure 1-1. The Spark stack
Spark Core
Spark Core contains the basic functionality of Spark, including components for task
scheduling, memory management, fault recovery, interacting with storage systems,
and more. Spark Core is also home to the API that defines resilient distributed data‐
sets (RDDs), which are Spark’s main programming abstraction. RDDs represent a
collection of items distributed across many compute nodes that can be manipulated
in parallel. Spark Core provides many APIs for building and manipulating these
collections.
Spark SQL
Spark SQL is Spark’s package for working with structured data. It allows querying
data via SQL as well as the Apache Hive variant of SQL—called the Hive Query Lan‐
guage (HQL)—and it supports many sources of data, including Hive tables, Parquet,
and JSON. Beyond providing a SQL interface to Spark, Spark SQL allows developers
to intermix SQL queries with the programmatic data manipulations supported by
RDDs in Python, Java, and Scala, all within a single application, thus combining SQL
with complex analytics. This tight integration with the rich computing environment
provided by Spark makes Spark SQL unlike any other open source data warehouse
tool. Spark SQL was added to Spark in version 1.0.
Shark was an older SQL-on-Spark project out of the University of California, Berke‐
ley, that modified Apache Hive to run on Spark. It has now been replaced by Spark
SQL to provide better integration with the Spark engine and language APIs.
Spark Streaming
Spark Streaming is a Spark component that enables processing of live streams of data.
Examples of data streams include logfiles generated by production web servers, or
queues of messages containing status updates posted by users of a web service. Spark
A Unified Stack | 3
Streaming provides an API for manipulating data streams that closely matches the
Spark Core’s RDD API, making it easy for programmers to learn the project and
move between applications that manipulate data stored in memory, on disk, or arriv‐
ing in real time. Underneath its API, Spark Streaming was designed to provide the
same degree of fault tolerance, throughput, and scalability as Spark Core.
MLlib
Spark comes with a library containing common machine learning (ML) functionality,
called MLlib. MLlib provides multiple types of machine learning algorithms, includ‐
ing classification, regression, clustering, and collaborative filtering, as well as sup‐
porting functionality such as model evaluation and data import. It also provides
some lower-level ML primitives, including a generic gradient descent optimization
algorithm. All of these methods are designed to scale out across a cluster.
GraphX
GraphX is a library for manipulating graphs (e.g., a social network’s friend graph)
and performing graph-parallel computations. Like Spark Streaming and Spark SQL,
GraphX extends the Spark RDD API, allowing us to create a directed graph with arbi‐
trary properties attached to each vertex and edge. GraphX also provides various oper‐
ators for manipulating graphs (e.g., subgraph and mapVertices) and a library of
common graph algorithms (e.g., PageRank and triangle counting).
Cluster Managers
Under the hood, Spark is designed to efficiently scale up from one to many thousands
of compute nodes. To achieve this while maximizing flexibility, Spark can run over a
variety of cluster managers, including Hadoop YARN, Apache Mesos, and a simple
cluster manager included in Spark itself called the Standalone Scheduler. If you are
just installing Spark on an empty set of machines, the Standalone Scheduler provides
an easy way to get started; if you already have a Hadoop YARN or Mesos cluster,
however, Spark’s support for these cluster managers allows your applications to also
run on them. Chapter 7 explores the different options and how to choose the correct
cluster manager.
Who Uses Spark, and for What?
Because Spark is a general-purpose framework for cluster computing, it is used for a
diverse range of applications. In the Preface we outlined two groups of readers that
this book targets: data scientists and engineers. Let’s take a closer look at each group
and how it uses Spark. Unsurprisingly, the typical use cases differ between the two,
4 | Chapter 1: Introduction to Data Analysis with Spark
but we can roughly classify them into two categories, data science and data
applications.
Of course, these are imprecise disciplines and usage patterns, and many folks have
skills from both, sometimes playing the role of the investigating data scientist, and
then “changing hats” and writing a hardened data processing application. Nonethe‐
less, it can be illuminating to consider the two groups and their respective use cases
separately.
Data Science Tasks
Data science, a discipline that has been emerging over the past few years, centers on
analyzing data. While there is no standard definition, for our purposes a data scientist
is somebody whose main task is to analyze and model data. Data scientists may have
experience with SQL, statistics, predictive modeling (machine learning), and pro‐
gramming, usually in Python, Matlab, or R. Data scientists also have experience with
techniques necessary to transform data into formats that can be analyzed for insights
(sometimes referred to as data wrangling).
Data scientists use their skills to analyze data with the goal of answering a question or
discovering insights. Oftentimes, their workflow involves ad hoc analysis, so they use
interactive shells (versus building complex applications) that let them see results of
queries and snippets of code in the least amount of time. Spark’s speed and simple
APIs shine for this purpose, and its built-in libraries mean that many algorithms are
available out of the box.
Spark supports the different tasks of data science with a number of components. The
Spark shell makes it easy to do interactive data analysis using Python or Scala. Spark
SQL also has a separate SQL shell that can be used to do data exploration using SQL,
or Spark SQL can be used as part of a regular Spark program or in the Spark shell.
Machine learning and data analysis is supported through the MLLib libraries. In
addition, there is support for calling out to external programs in Matlab or R. Spark
enables data scientists to tackle problems with larger data sizes than they could before
with tools like R or Pandas.
Sometimes, after the initial exploration phase, the work of a data scientist will be
“productized,” or extended, hardened (i.e., made fault-tolerant), and tuned to
become a production data processing application, which itself is a component of a
business application. For example, the initial investigation of a data scientist might
lead to the creation of a production recommender system that is integrated into a
web application and used to generate product suggestions to users. Often it is a dif‐
ferent person or team that leads the process of productizing the work of the data sci‐
entists, and that person is often an engineer.
Who Uses Spark, and for What? | 5
Data Processing Applications
The other main use case of Spark can be described in the context of the engineer per‐
sona. For our purposes here, we think of engineers as a large class of software devel‐
opers who use Spark to build production data processing applications. These
developers usually have an understanding of the principles of software engineering,
such as encapsulation, interface design, and object-oriented programming. They fre‐
quently have a degree in computer science. They use their engineering skills to design
and build software systems that implement a business use case.
For engineers, Spark provides a simple way to parallelize these applications across
clusters, and hides the complexity of distributed systems programming, network
communication, and fault tolerance. The system gives them enough control to moni‐
tor, inspect, and tune applications while allowing them to implement common tasks
quickly. The modular nature of the API (based on passing distributed collections of
objects) makes it easy to factor work into reusable libraries and test it locally.
Spark’s users choose to use it for their data processing applications because it pro‐
vides a wide variety of functionality, is easy to learn and use, and is mature and
reliable.
A Brief History of Spark
Spark is an open source project that has been built and is maintained by a thriving
and diverse community of developers. If you or your organization are trying Spark
for the first time, you might be interested in the history of the project. Spark started
in 2009 as a research project in the UC Berkeley RAD Lab, later to become the
AMPLab. The researchers in the lab had previously been working on Hadoop Map‐
Reduce, and observed that MapReduce was inefficient for iterative and interactive
computing jobs. Thus, from the beginning, Spark was designed to be fast for interac‐
tive queries and iterative algorithms, bringing in ideas like support for in-memory
storage and efficient fault recovery.
Research papers were published about Spark at academic conferences and soon after
its creation in 2009, it was already 10–20× faster than MapReduce for certain jobs.
Some of Spark’s first users were other groups inside UC Berkeley, including machine
learning researchers such as the Mobile Millennium project, which used Spark to
monitor and predict traffic congestion in the San Francisco Bay Area. In a very short
time, however, many external organizations began using Spark, and today, over 50
organizations list themselves on the Spark PoweredBy page, and dozens speak about
their use cases at Spark community events such as Spark Meetups and the Spark
Summit. In addition to UC Berkeley, major contributors to Spark include Databricks,
Yahoo!, and Intel.
6 | Chapter 1: Introduction to Data Analysis with Spark
1 Shark has been replaced by Spark SQL.
In 2011, the AMPLab started to develop higher-level components on Spark, such as
Shark (Hive on Spark)
1
and Spark Streaming. These and other components are some‐
times referred to as the Berkeley Data Analytics Stack (BDAS).
Spark was first open sourced in March 2010, and was transferred to the Apache Soft‐
ware Foundation in June 2013, where it is now a top-level project.
Spark Versions and Releases
Since its creation, Spark has been a very active project and community, with the
number of contributors growing with each release. Spark 1.0 had over 100 individual
contributors. Though the level of activity has rapidly grown, the community contin‐
ues to release updated versions of Spark on a regular schedule. Spark 1.0 was released
in May 2014. This book focuses primarily on Spark 1.1.0 and beyond, though most of
the concepts and examples also work in earlier versions.
Storage Layers for Spark
Spark can create distributed datasets from any file stored in the Hadoop distributed
filesystem (HDFS) or other storage systems supported by the Hadoop APIs (includ‐
ing your local filesystem, Amazon S3, Cassandra, Hive, HBase, etc.). It’s important to
remember that Spark does not require Hadoop; it simply has support for storage sys‐
tems implementing the Hadoop APIs. Spark supports text files, SequenceFiles, Avro,
Parquet, and any other Hadoop InputFormat. We will look at interacting with these
data sources in Chapter 5.
Spark Versions and Releases | 7
CHAPTER 2
Downloading Spark and Getting Started
In this chapter we will walk through the process of downloading and running Spark
in local mode on a single computer. This chapter was written for anybody who is new
to Spark, including both data scientists and engineers.
Spark can be used from Python, Java, or Scala. To benefit from this book, you don’t
need to be an expert programmer, but we do assume that you are comfortable with
the basic syntax of at least one of these languages. We will include examples in all
languages wherever possible.
Spark itself is written in Scala, and runs on the Java Virtual Machine (JVM). To run
Spark on either your laptop or a cluster, all you need is an installation of Java 6 or
newer. If you wish to use the Python API you will also need a Python interpreter
(version 2.6 or newer). Spark does not yet work with Python 3.
Downloading Spark
The first step to using Spark is to download and unpack it. Let’s start by downloading
a recent precompiled released version of Spark. Visit http://spark.apache.org/down
loads.html, select the package type of “Pre-built for Hadoop 2.4 and later,” and click
“Direct Download.” This will download a compressed TAR file, or tarball, called
spark-1.2.0-bin-hadoop2.4.tgz.
Windows users may run into issues installing Spark into a direc‐
tory with a space in the name. Instead, install Spark in a directory
with no space (e.g., C:\spark).
9
You don’t need to have Hadoop, but if you have an existing Hadoop cluster or HDFS
installation, download the matching version. You can do so from http://
spark.apache.org/downloads.html by selecting a different package type, but they will
have slightly different filenames. Building from source is also possible; you can find
the latest source code on GitHub or select the package type of “Source Code” when
downloading.
Most Unix and Linux variants, including Mac OS X, come with a
command-line tool called tar that can be used to unpack TAR
files. If your operating system does not have the tar command
installed, try searching the Internet for a free TAR extractor—for
example, on Windows, you may wish to try 7-Zip.
Now that we have downloaded Spark, let’s unpack it and take a look at what comes
with the default Spark distribution. To do that, open a terminal, change to the direc‐
tory where you downloaded Spark, and untar the file. This will create a new directory
with the same name but without the final .tgz suffix. Change into that directory and
see what’s inside. You can use the following commands to accomplish all of that:
cd ~
tar -xf spark-1.2.0-bin-hadoop2.4.tgz
cd spark-1.2.0-bin-hadoop2.4
ls
In the line containing the tar command, the x flag tells tar we are extracting files,
and the f flag specifies the name of the tarball. The ls command lists the contents of
the Spark directory. Let’s briefly consider the names and purposes of some of the
more important files and directories you see here that come with Spark:
README.md
Contains short instructions for getting started with Spark.
bin
Contains executable files that can be used to interact with Spark in various ways
(e.g., the Spark shell, which we will cover later in this chapter).
core, streaming, python, …
Contains the source code of major components of the Spark project.
examples
Contains some helpful Spark standalone jobs that you can look at and run to
learn about the Spark API.
Don’t worry about the large number of directories and files the Spark project comes
with; we will cover most of these in the rest of this book. For now, let’s dive right in
and try out Spark’s Python and Scala shells. We will start by running some of the
10 | Chapter 2: Downloading Spark and Getting Started
examples that come with Spark. Then we will write, compile, and run a simple Spark
job of our own.
All of the work we will do in this chapter will be with Spark running in local mode;
that is, nondistributed mode, which uses only a single machine. Spark can run in a
variety of different modes, or environments. Beyond local mode, Spark can also be
run on Mesos, YARN, or the Standalone Scheduler included in the Spark distribu‐
tion. We will cover the various deployment modes in detail in Chapter 7.
Introduction to Spark’s Python and Scala Shells
Spark comes with interactive shells that enable ad hoc data analysis. Spark’s shells will
feel familiar if you have used other shells such as those in R, Python, and Scala, or
operating system shells like Bash or the Windows command prompt.
Unlike most other shells, however, which let you manipulate data using the disk and
memory on a single machine, Spark’s shells allow you to interact with data that is dis‐
tributed on disk or in memory across many machines, and Spark takes care of auto‐
matically distributing this processing.
Because Spark can load data into memory on the worker nodes, many distributed
computations, even ones that process terabytes of data across dozens of machines,
can run in a few seconds. This makes the sort of iterative, ad hoc, and exploratory
analysis commonly done in shells a good fit for Spark. Spark provides both Python
and Scala shells that have been augmented to support connecting to a cluster.
Most of this book includes code in all of Spark’s languages, but
interactive shells are available only in Python and Scala. Because a
shell is very useful for learning the API, we recommend using one
of these languages for these examples even if you are a Java devel‐
oper. The API is similar in every language.
The easiest way to demonstrate the power of Spark’s shells is to start using one of
them for some simple data analysis. Let’s walk through the example from the Quick
Start Guide in the official Spark documentation.
The first step is to open up one of Spark’s shells. To open the Python version of the
Spark shell, which we also refer to as the PySpark Shell, go into your Spark directory
and type:
bin/pyspark
(Or bin\pyspark in Windows.) To open the Scala version of the shell, type:
bin/spark-shell
Introduction to Spark’s Python and Scala Shells | 11
The shell prompt should appear within a few seconds. When the shell starts, you will
notice a lot of log messages. You may need to press Enter once to clear the log output
and get to a shell prompt. Figure 2-1 shows what the PySpark shell looks like when
you open it.
Figure 2-1. The PySpark shell with default logging output
You may find the logging statements that get printed in the shell distracting. You can
control the verbosity of the logging. To do this, you can create a file in the conf direc‐
tory called log4j.properties. The Spark developers already include a template for this
file called log4j.properties.template. To make the logging less verbose, make a copy of
conf/log4j.properties.template called conf/log4j.properties and find the following line:
log4j.rootCategory=INFO, console
Then lower the log level so that we show only the WARN messages, and above by
changing it to the following:
log4j.rootCategory=WARN, console
When you reopen the shell, you should see less output (Figure 2-2).
12 | Chapter 2: Downloading Spark and Getting Started
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